PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G01640.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 320aa    MW: 36183 Da    PI: 10.0626
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G01640.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.32.4e-29959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++gklye++s
  LPERR03G01640.2  9 KRIENPTSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 59
                     79***********************************************86 PP

2K-box70.93.9e-2478171799
            K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      +s +++++ e+ + +++ L k++e L+  +R+llGe+Le++s+ eL++Le +Le+sl++iR +K++l+ eq+++l++ke +l+++n++Lr+k +
  LPERR03G01640.2  78 SSkTAQQDIEQVKADAEGLAKKLEALEAYKRKLLGEKLEECSIDELHSLEVKLERSLTSIRGRKTKLMEEQVSKLREKEIKLRKDNEDLREKCK 171
                      334788999**********************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.525161IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.70E-41374No hitNo description
SuperFamilySSF554553.01E-32382IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2482171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.41686176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000060Biological Processprotein import into nucleus, translocation
GO:0009409Biological Processresponse to cold
GO:0009739Biological Processresponse to gibberellin
GO:0009911Biological Processpositive regulation of flower development
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVRGKTQMKR IENPTSRQVT FSKRRSGLLK KAFELSVLCD AEVALIVFSP RGKLYEFASA  60
SAQKTIERYR TYTKENISSK TAQQDIEQVK ADAEGLAKKL EALEAYKRKL LGEKLEECSI  120
DELHSLEVKL ERSLTSIRGR KTKLMEEQVS KLREKEIKLR KDNEDLREKC KNQPVPMVAP  180
VPIVASAPVT VTAADDNPGR NNTNNNMDGC LAEAAPALLQ EIVRLRLRHS PILKVRSPRI  240
SWISVLREKG DARHAMTPDL KNPHHVVYVL TCINCPHGCK CETHAPITNP PPGRNPSIGC  300
LHYRHLNRNL MCLHVFLSLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3p57_J1e-18372271Myocyte-specific enhancer factor 2A
3p57_I1e-18372271Myocyte-specific enhancer factor 2A
3p57_D1e-18372271Myocyte-specific enhancer factor 2A
3p57_C1e-18372271Myocyte-specific enhancer factor 2A
3p57_B1e-18372271Myocyte-specific enhancer factor 2A
3p57_A1e-18372271Myocyte-specific enhancer factor 2A
3kov_J1e-18372271Myocyte-specific enhancer factor 2A
3kov_I1e-18372271Myocyte-specific enhancer factor 2A
3kov_B1e-18372271Myocyte-specific enhancer factor 2A
3kov_A1e-18372271Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00076ChIP-chipTransfer from AT2G45660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0033280.0AB003328.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:S11905.
GenBankAK0676410.0AK067641.1 Oryza sativa Japonica Group cDNA clone:J013108C22, full insert sequence.
GenBankAK1049210.0AK104921.1 Oryza sativa Japonica Group cDNA clone:001-047-H02, full insert sequence.
GenBankAY3324760.0AY332476.1 Oryza sativa (japonica cultivar-group) MADS box protein (AGL20) mRNA, complete cds.
GenBankCT8300370.0CT830037.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA030D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630979.11e-118PREDICTED: MADS-box transcription factor 50
SwissprotQ9XJ601e-120MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLA0A0D9VNV30.0A0A0D9VNV3_9ORYZ; Uncharacterized protein
STRINGORGLA03G0015400.11e-117(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14133379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-66AGAMOUS-like 20